Publications

BibTeX

@misc{directevidencea-2026/6,
  title={Direct evidence and quantification of homologous recognition between DNA duplexes},
  author={Stannard A, Haimov E, Hedley JG, Xiao Y, Di Antonio M et al.},
  year = "2026"
}

BibTeX

@article{directevidencea-2026/6,
  title={Direct evidence and quantification of homologous recognition between DNA duplexes},
  author={Stannard A, Haimov E, Hedley JG, Xiao Y, Di Antonio M et al.},
  journal={Proceedings of the National Academy of Sciences},
  volume={123},
  number={e2530949123},
  publisher={National Academy of Sciences},
  year = "2026"
}

BibTeX

@misc{geneptrevisited-2026/4,
  title={GenePT Revisited: Do Better Text Embeddings Make Better Gene Embeddings?},
  author={Hedley JG, Torr PHS & Märtens K},
  year = "2026"
}

BibTeX

@misc{recognitioninco-2026/1,
  title={Recognition in Confinement: The Dynamics of Homologous Gene Pairing},
  author={Haimov E, Hedley JG, Simonowicz NE, Xiao Y, Stannard A et al.},
  year = "2026"
}

BibTeX

@misc{detectionandqua-2025/9,
  title={Detection and quantification of counterion-mediated homologous recognition in double-stranded DNA},
  author={Stannard A, Haimov E, Hedley JG, Xiao Y, Di Antonio M et al.},
  year = "2025"
}

BibTeX

@misc{detectionandqua-2025/8,
  title={Detection and quantification of counterion-mediated homologous recognition in double-stranded DNA},
  author={Stannard A, Haimov E, Hedley JG, Xiao Y, Di Antonio M et al.},
  year = "2025"
}

@misc{modelinggeneexp-2025/7,
  title={Modeling Gene Expression Distributional Shifts for Unseen Genetic Perturbations},
  author={Ramakrishnan K, Hedley JG, Qu S, Dokania PK, Torr PHS et al.},
  year = "2025"
}

BibTeX

@article{whatdoesanionfe-2025/3,
  title={What does an ion feel at the electrochemical interface? Revisiting electrosorption through nonlocal electrostatics.},
  author={Hedley JG, Bhatt KK, Berthoumieux H & Kornyshev AA},
  journal={The Journal of chemical physics},
  volume={162},
  pages={114703},
  publisher={AIP Publishing},
  year = "2025"
}

BibTeX

@article{waterstructural-2024/8,
  title={Water structural effects on DNA–DNA interactions and homologous recognition},
  author={Hedley JG, Haimov E & Kornyshev AA},
  journal={Physica A Statistical Mechanics and its Applications},
  volume={647},
  pages={129894},
  publisher={Elsevier},
  year = "2024"
}

BibTeX

@article{nonlocalstructu-2024/7,
  title={Nonlocal structural effects of water on DNA homology recognition.},
  author={Haimov E, Hedley JG & Kornyshev AA},
  journal={Journal of physics. Condensed matter : an Institute of Physics journal},
  volume={36},
  year = "2024"
}

@article{electricfieldof-2024/3,
  title={Electric field of DNA in solution: who is in charge?},
  author={Hedley JG, Coshic K, Aksimentiev A & Kornyshev AA},
  journal={ArXiv},
  year = "2024"
}

@misc{nonlocalstructu-2024/2,
  title={Nonlocal Structural Effects of Water on DNA Homology Recognition},
  author={Haimov E, Hedley JG & Kornyshev AA},
  year = "2024"
}

BibTeX

@article{electrifiedchar-2024/2,
  title={Electrified/charged aqueous interfaces: general discussion.},
  author={Advincula XR, Backus EHG, Bonn M, Cox SJ, Diebold U et al.},
  journal={Faraday discussions},
  volume={249},
  pages={381-407},
  year = "2024"
}

BibTeX

@article{electricfieldof-2024/,
  title={Electric Field of DNA in Solution: Who Is in Charge?},
  author={Hedley JG, Coshic K, Aksimentiev A & Kornyshev AA},
  journal={Phys Rev X},
  volume={14},
  year = "2024"
}

BibTeX

@article{thedramaticeffe-2023/5,
  title={The Dramatic Effect of Water Structure on Hydration Forces and the Electrical Double Layer},
  author={Hedley JG, Berthoumieux H & Kornyshev AA},
  journal={The Journal of Physical Chemistry C},
  volume={127},
  pages={8429-8447},
  publisher={American Chemical Society (ACS)},
  year = "2023"
}

BibTeX

@article{nucleosomeinduc-2021/6,
  title={Nucleosome-induced homology recognition in chromatin.},
  author={Hedley JG, Teif VB & Kornyshev AA},
  journal={Journal of the Royal Society, Interface},
  volume={18},
  pages={20210147},
  year = "2021"
}

BibTeX

@misc{nucleosomeinduc-/,
  title={Nucleosome induced homology recognition in chromatin},
  author={Hedley JG, Teif VB & Kornyshev AA}
}

@inproceedings{perturbagentana-/,
  title={PerturbAgent: An Agentic AI system for Analysis and Prediction of Genetic Perturbations},
  author={Pei K, Qu S, Torr P, Hedley J & Schroeder de Witt C},
  booktitle={AAAI Workshop 2026}
}